gui

phyllotaxis_analysis.gui

MainWindow

MainWindow()

Bases: QMainWindow

Main application window for the Phyllotaxis Analyzer.

Source code in src/phyllotaxis_analysis/gui/gui.py

def __init__(self) -> None:
    super().__init__()

    # Runtime state
    self.data: list | None = None
    self.datafilename: str = ""
    self.save_filename: str = ""
    self.user_seq: list[float] | None = None

    # Per-analysis result state (populated by _display_analysis_results)
    self.current_seq: list[float] = []
    self.dir_rev: bool = False
    self.seq_rev: list[float] = []
    self.prediction_dir: list[float] = []
    self.prediction_reverse: list[float] = []
    self.not_explained_list_dir: list[int] = []
    self.not_explained_list_rev: list[int] = []
    self.invalids_dir: list = []
    self.invalids_reverse: list = []

    self._setup_window()
    self._create_actions()
    self._setup_menus()
    self._setup_toolbars()
    self._setup_central_widget()
    self._connect_signals()

analyze

analyze(user_enter=None, reverse_analysis=False)

Run analysis on the current sequence.

Parameters:

Name	Type	Description	Default
user_enter		When not None the analysis uses self.user_seq instead of a sequence from the loaded file.	None
reverse_analysis	bool	Force reverse analysis even when the checkbox is unchecked.	False

Returns:

Type	Description
bool	True on success, False on validation failure.

Source code in src/phyllotaxis_analysis/gui/gui.py

def analyze(self, user_enter=None, reverse_analysis: bool = False) -> bool:
    """Run analysis on the current sequence.

    Parameters
    ----------
    user_enter:
        When not ``None`` the analysis uses ``self.user_seq`` instead of a
        sequence from the loaded file.
    reverse_analysis:
        Force reverse analysis even when the checkbox is unchecked.

    Returns
    -------
    bool
        ``True`` on success, ``False`` on validation failure.
    """
    if not self.dir_check.isChecked() and not self.reverse_check.isChecked():
        QtWidgets.QMessageBox.warning(
            self, "Check box warning", "Please choose a direction!", QtWidgets.QMessageBox.Ok
        )
        return False

    if self.data is None and user_enter is None:
        QtWidgets.QMessageBox.warning(
            self, "File Warning", "Open a data file please!", QtWidgets.QMessageBox.Ok
        )
        return False

    params = self._collect_params()

    self.status_label.setText("Analyzing...")
    self.status_bar.addWidget(self.status_label, 1)

    seq = (
        list(self.user_seq)
        if user_enter is not None
        else list(self.data[params["plant_no"]])
    )

    if self.direction_check.isChecked():
        seq = change_sequence_orientation(seq)

    all_seqs: list[list[float]] = []
    self.dir_rev = self.dir_check.isChecked() and self.reverse_check.isChecked()

    if self.dir_check.isChecked():
        all_seqs.append(seq)
    if self.reverse_check.isChecked() or reverse_analysis:
        seq_rev = list(seq)
        seq_rev.reverse()
        all_seqs.append(seq_rev)

    self.current_seq = all_seqs[0]

    main_list_of_trees_index = []
    for s in all_seqs:
        trees = code_sequence(
            s,
            params["max_inv"],
            params["phyl_angle"],
            borders_dict,
            params["cons_par"],
            params["prob_threshold"],
        )
        main_list_of_trees_index.append(trees)

    self.status_label.setText("")
    self._display_analysis_results(main_list_of_trees_index, all_seqs, user_enter)
    return True

PlotWindow

PlotWindow(parent=None)

Bases: QMainWindow

Standalone window used to display a matplotlib figure with save support.

Source code in src/phyllotaxis_analysis/gui/gui.py

def __init__(self, parent: QtWidgets.QWidget | None = None) -> None:
    super().__init__(parent)
    self.canvas: FigureCanvas | None = None
    self._setup_menus()